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Delineo: Infectious Disease Simulation

Contributed to JHU's core simulation engine modeling stochastic disease spread across communities. Optimized NumPy-based pipelines and refined geographic modeling for improved accuracy.

Stochastic Modeling NumPy Simulation
Demo

Neural Population Dynamics Simulator

Exact stochastic simulation of neural populations using the Gillespie algorithm. Models refractory periods, correlated variability via Cholesky decomposition, and network coupling. Includes parameter presets, Fano factor / CV statistics, and CSV data export.

Monte Carlo Gillespie Algorithm Neuroscience Streamlit
Demo

Retinal Ganglion Cell Encoding Models

LN and GLM encoding models predicting retinal neuron responses to visual stimuli. Features spike-triggered average estimation, model comparison metrics (AIC, log-likelihood), tuning curves, and data export for spike trains and model parameters.

Encoding Models Information Theory Neuroscience
Demo

Neural Signal Classification for Motor Intent

Signal processing and ML pipeline classifying motor intent from synthetic ECoG data. Extracts frequency-band features (beta desynchronization, gamma activation) and trains a Random Forest classifier with calibrated probabilities across 4 movement classes.

scikit-learn BCI Signal Processing
Demo

Multi-Modal Cell Type Classifier

Late-fusion classifier for neuron types using electrophysiology, morphology, and transcriptomics. Per-modality GradientBoosting classifiers feed a meta-classifier with modality dropout augmentation, achieving 90% fusion accuracy across 11 cell types.

Multi-Modal Fusion scikit-learn Neuroscience
Demo

Synaptic Connectivity Prediction

Predicts neural connections from 3D morphology and cell-type features using gradient boosting on pairwise neuron features. Trained on synthetic connectome data following published cortical wiring rules, achieving 82% AUC on held-out networks.

Connectomics scikit-learn Neuroscience
Demo

Alzheimer's Disease Progression Modeling

Predicts Alzheimer's progression from clinical features (MMSE, hippocampal volume, APOE4, biomarkers) using gradient boosting for risk stratification and trajectory regression. Trained on ADNI-matched synthetic data with realistic biomarker correlations.

Clinical ML Biomarkers Healthcare ML